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SRX299089: Whole Genome Sequencing of Nocardioides sp. JGI 0001009-J09
1 ILLUMINA (Illumina HiSeq 2000) run: 14.7M spots, 4.4G bases, 2.8Gb downloads

Submitted by: DOE JOINT GENOME INSTITUTE (JGI)
Study: Nocardioides sp. JGI 0001009-J09
show Abstracthide Abstract
Rhizosphere Grand Challenge Single Cell Sequencing. The goal of this project is to comprehensively characterize the genomes of microorganisms found in the rhizosphere and endosphere of Arabidopsis thaliana. Organisms for study have been targeted based on their reproducible association with one or more Arabidopsis genotypes grown in natural soil. To obtain genomes from both culturable and unculturable fractions of the Arabidopsis microbiome, rhizosphere and endosphere samples were disaggregated and individual cells sorted by flow cytometry and amplified by MDA, then microbes of interest were identified by 16S rRNA sequencing and their whole genomes sequenced. Genomic sequences will be analyzed for genes participating in the plant-microbe symbiosis.
Sample: Nocardioides sp. JGI 0001009-J09
SAMN02194817 • SRS438926 • All experiments • All runs
Library:
Name: HAPU
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol:
Spot descriptor:
forward151  forward

Runs: 1 run, 14.7M spots, 4.4G bases, 2.8Gb
Run# of Spots# of BasesSizePublished
SRR89239814,654,7704.4G2.8Gb2013-06-11

ID:
421380

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